PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539165.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 312aa    MW: 34306.7 Da    PI: 5.1457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r        ++R+  ++k++w+++
   XP_010539165.1  5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPDfssqlTHRSNIDLKDKWRNL 56
                     79************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.578162IPR017930Myb domain
SuperFamilySSF466891.51E-16264IPR009057Homeodomain-like
SMARTSM007177.8E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-15556IPR009057Homeodomain-like
CDDcd116603.95E-21656No hitNo description
PfamPF139212.7E-9869No hitNo description
SMARTSM005262.7E-16147212IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.35E-15148228IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-11148218IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.016149217IPR005818Linker histone H1/H5, domain H15
PfamPF005383.9E-9151210IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILRDPDFSSQ LTHRSNIDLK DKWRNLSVAP  60
GKVAFLPEGE SFFSVETIGE LRPPWILGVN SMDINNMEDW LLTITAAAAA ASTATTNINP  120
SPAASLPRSA SSDLSMDDNS LNIAVDAKNA PRYDGMIFEA LSALSDANGS DITAILSFIE  180
KRHELPLNFR RILGSRLRRL AAQGKLEKVQ NFYKISDPSG TRTPAPRQKD TNLKPRQSNS  240
QSNTTVTQEM VEEAAITAAY KVVEAENKVD VARGAMEELE RMTRIAEDTE VFLEIAKEIH  300
ERCSGGEVVL LA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539165.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4IEY41e-107TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLV4K9Z41e-118V4K9Z4_EUTSA; Uncharacterized protein
STRINGAT1G72740.11e-105(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-73MYB_related family protein